usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 23.72845 -7.3984 101.09425 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1006 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 259, nonpolar: 219, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.82876 33.70914 -16.52019 2.49245 92.77032 111.07461 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 396 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 337 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 319 Spheres center of coords (x y z): 23.9114555799373 -9.78735310344828 103.305830626959 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.11724903769914 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 20