usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 22.82425 -18.82405 -1.91045 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1158 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 872 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 872 Number of spheres polar: 293, nonpolar: 405, out of current total: 872 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.83301 32.63999 -28.39975 -8.84200 -11.88899 7.95340 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 369 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 355 Spheres center of coords (x y z): 19.0855154084507 -17.7770087323944 -1.65882549295775 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.5022662178231 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 20