usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 14.3554285714286 14.1411142857143 34.6490571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1168 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 677 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 677 Number of spheres polar: 223, nonpolar: 280, out of current total: 677 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.40164 23.88816 4.15625 21.01830 24.66848 44.58562 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 369 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 317 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 304 Spheres center of coords (x y z): 12.5033750328948 11.9304618421053 36.7320666776316 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.40853917322303 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 35