usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -29.38685 -10.48785 21.60155 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 898 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 898 Number of spheres polar: 339, nonpolar: 315, out of current total: 898 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -39.36157 -20.37253 -20.35546 -0.49172 11.63700 31.58456 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 499 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 416 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 402 Spheres center of coords (x y z): -30.3947449502488 -12.2869131094527 20.1641746766169 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.3775632319841 Final number of output spheres is: 60 Number of polar spheres: 38 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 20