usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 14.5867428571429 14.4944857142857 34.7486 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1163 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 687 Number of spheres polar: 186, nonpolar: 358, out of current total: 687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.59326 24.14724 4.63969 22.04327 25.43058 44.73657 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 194 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 13.0043862295082 12.3336910382514 36.4627993442623 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.24954906303747 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 35