usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 14.5926571428571 14.8470571428571 34.9213714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1750 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1053 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1053 Number of spheres polar: 318, nonpolar: 481, out of current total: 1053 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.59995 24.49811 4.88600 24.83858 24.93213 44.90962 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 586 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 506 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 490 Spheres center of coords (x y z): 12.8287148979592 13.3528303877551 35.3004693061225 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4984023358711 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 35