usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 14.3247714285714 14.4504285714286 34.5706285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1320 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 790 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 790 Number of spheres polar: 283, nonpolar: 307, out of current total: 790 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.33344 24.30700 4.62525 22.11662 24.60259 44.54580 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 409 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 360 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 12.8682668358209 11.9136300895522 36.8242725373134 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.21793725399285 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35