usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 15.9607142857143 15.4438571428571 31.8112857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1330 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 820 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 820 Number of spheres polar: 326, nonpolar: 277, out of current total: 820 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.99254 24.67753 5.48802 25.38148 21.84862 41.78686 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 298 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 14.0478727631579 14.9114338596491 33.7059291666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.91472955182326 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 21