usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 36.1378888888889 59.5457222222222 81.2474444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1068 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 266, nonpolar: 279, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.15811 46.10605 49.58047 69.46704 71.25747 91.23387 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 262 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 37.2748928078818 56.7934919704433 79.3832699507389 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.27984586523939 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 18