usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 14.8173684210526 14.2646052631579 34.9822894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1550 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 937 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 937 Number of spheres polar: 352, nonpolar: 367, out of current total: 937 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.03893 23.82586 4.28066 24.16119 25.00252 44.87812 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 313 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 12.2817472762646 13.966036459144 34.8793679377432 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45689390464933 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38