usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 15.4677428571429 14.5220857142857 33.7970285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1496 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 907 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 907 Number of spheres polar: 320, nonpolar: 367, out of current total: 907 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.56302 23.68242 4.63397 24.51697 23.87477 43.54942 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 306 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 252 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 241 Spheres center of coords (x y z): 13.622373526971 14.0465295850622 34.3397337344398 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.69074590535372 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35