usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 13.9508181818182 14.0563636363636 35.1158484848485 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1153 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 716 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 262, nonpolar: 278, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.06045 23.66522 4.22011 21.47673 25.33607 45.09859 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 402 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 333 Spheres center of coords (x y z): 12.524735975976 11.9559169369369 37.2848610510511 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.41946821833242 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 33