usefragsph not on
There are 35 ligand heavy atoms
Ligand center of coords (x y z): 12.5526857142857 27.9215428571428 -11.3771714285714
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2067
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1193
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1193
Number of spheres polar: 410, nonpolar: 534, out of current total: 1193
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.55884 22.52457 17.95723 37.89084 -21.37643 -3.73092
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 583
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 503
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 493
Spheres center of coords (x y z): 10.145875030426 27.6388925557809 -12.525250811359
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.46364057041998
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 35