usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 14.5192285714286 14.4316285714286 34.6324571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1190 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 688 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 685 Number of spheres polar: 242, nonpolar: 246, out of current total: 685 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.58189 24.35479 4.46040 23.87655 24.64091 44.50556 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 314 Spheres center of coords (x y z): 12.549038343949 12.9673062101911 35.8701366878981 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.43309952971232 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 35