usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 28.2492571428571 -21.7062857142857 40.4735428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1224 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 780 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780 Number of spheres polar: 245, nonpolar: 320, out of current total: 780 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.51531 38.10657 -31.68789 -11.79776 30.48450 50.29898 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 206 Spheres center of coords (x y z): 27.2719821359223 -25.7636739805825 41.8579806796116 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.18056240644203 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 35