usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 15.1603783783784 13.3365945945946 34.0488378378378 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1423 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 850 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 850 Number of spheres polar: 255, nonpolar: 442, out of current total: 850 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.16913 24.45685 3.37274 22.40009 24.06360 43.95905 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 411 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 356 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 13.2928437647059 11.6427167058824 36.3651605588235 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.52353524750928 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37