usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -29.28 -10.4354 21.598 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 974 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 974 Number of spheres polar: 258, nonpolar: 392, out of current total: 974 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -39.02351 -19.78667 -20.39000 -0.49949 11.61626 31.58535 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 552 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 477 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 467 Spheres center of coords (x y z): -30.8539190578159 -12.5147035546039 20.1428360385439 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.55512929730574 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 20