usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 105.8260625 4.739625 5.45521875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1460 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 810 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 810 Number of spheres polar: 298, nonpolar: 313, out of current total: 810 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 95.90522 115.80849 -5.18980 14.60322 -4.50575 15.41665 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 382 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 370 Spheres center of coords (x y z): 106.199230216216 4.31723543243243 5.55509494594595 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.0535862673305 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32