usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 91.72040625 -12.0986875 40.3155625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1478 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 963 Number of spheres polar: 251, nonpolar: 469, out of current total: 963 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 82.23303 101.08181 -22.09542 -2.13687 30.34108 50.29511 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 486 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 414 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 407 Spheres center of coords (x y z): 92.2666391400492 -11.1182367813268 40.3585664864865 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85112785194795 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32