Distance from surface specified: 1.80 There are 37 ligand heavy atoms Ligand center of coords (x y z): 14.8518648648649 13.319 34.5868108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 17704 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13399 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12858 Number of spheres polar: 7002, nonpolar: 4473, out of current total: 12858 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.85840 28.84780 -0.67760 27.31580 20.59200 48.58340 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1585 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 826 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 803 Spheres center of coords (x y z): 9.70916488169365 12.2608679950187 34.3536704856787 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.7918198401712 Final number of output spheres is: 200 Number of polar spheres: 98 Number of nonpolar spheres: 89 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 37