usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 27.24788 8.40716 28.36708
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1062
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 677
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 677
Number of spheres polar: 299, nonpolar: 248, out of current total: 677
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.31895 37.24026 -1.56584 17.96343 18.45121 37.87151
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 368
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 307
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 274
Spheres center of coords (x y z): 28.1526561678832 10.4805138686131 26.1348451824817
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.21322487435367
Final number of output spheres is: 60
Number of polar spheres: 32
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 25