usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 19.5476363636364 17.6515454545455 33.687 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 888 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 547 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 547 Number of spheres polar: 206, nonpolar: 183, out of current total: 547 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.18444 29.54302 7.69829 27.60276 23.75571 43.55508 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 186 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 148 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 126 Spheres center of coords (x y z): 24.8298261111111 17.3889914285714 34.7868999206349 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.62231607684231 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 11