usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 10.1316538461538 4.91211538461538 23.6945 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 676 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 408 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 396 Number of spheres polar: 101, nonpolar: 173, out of current total: 396 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.55080 19.99030 -4.46649 14.88643 13.85406 33.59519 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 182 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 145 Spheres center of coords (x y z): 10.125002 8.49280724137931 23.3616119310345 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.099631844005 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 26