usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 10.13664 5.9808 23.2024
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 716
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 416
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412
Number of spheres polar: 134, nonpolar: 120, out of current total: 412
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.92966 19.85951 -2.98698 15.75838 13.56572 33.17200
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 267
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 229
Spheres center of coords (x y z): 9.63747742358079 8.91250515283842 23.5597646724891
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.23015214852904
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 25