usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 9.77957894736842 3.78194736842105 24.3082631578947 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 673 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 393 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 390 Number of spheres polar: 124, nonpolar: 129, out of current total: 390 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.03233 19.00426 -5.80517 13.76586 14.49250 34.28074 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 166 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 133 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 119 Spheres center of coords (x y z): 9.45543084033613 7.83716756302521 24.5173437815126 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.3215756584721 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 19