usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 10.02552 5.94888 23.2464 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 562 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 363 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 360 Number of spheres polar: 117, nonpolar: 144, out of current total: 360 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.07000 19.74483 -3.16543 15.53411 13.44225 32.51940 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 153 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 131 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 114 Spheres center of coords (x y z): 10.9217131578947 8.74113903508772 23.1458165789474 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.81539890975403 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 25