usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 9.83263636363637 4.07281818181818 24.5671363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 676 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 439 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 436 Number of spheres polar: 133, nonpolar: 132, out of current total: 436 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.06931 19.78922 -5.70328 14.07001 14.74252 34.56542 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 265 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 218 Spheres center of coords (x y z): 9.73843513761468 7.93283559633027 24.8537787155963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.59096716320249 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 22