usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 113.79012 148.1602812 1.08736
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1639
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1013
WARNING: removing a crystallographic sphere that is distance 0.631217078349446 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1008
Number of spheres polar: 355, nonpolar: 442, out of current total: 1008
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 103.88246 123.77306 138.19029 157.98135 -8.84678 11.06529
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 329
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 279
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 273
Spheres center of coords (x y z): 113.351515421245 144.024046959707 1.2589821978022
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.32496294694142
Final number of output spheres is: 45
Number of polar spheres: 29
Number of nonpolar spheres: 11
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 24