usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 8.73369230769231 2.06453846153846 25.2567692307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 531 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 323 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 319 Number of spheres polar: 94, nonpolar: 145, out of current total: 319 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.25135 18.18600 -7.41651 11.79424 18.20591 35.25551 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 172 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 154 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 131 Spheres center of coords (x y z): 8.20326351145039 5.44280709923664 25.4599318320611 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.34949606283512 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 13