usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 23.9867857142857 14.8255357142857 32.3189642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1071 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 665 Number of spheres polar: 256, nonpolar: 174, out of current total: 665 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.06219 33.77679 4.85570 24.79008 22.40012 42.26100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 269 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 228 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 214 Spheres center of coords (x y z): 26.4278378971963 14.5860560747663 32.9136200934579 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77819926054277 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28