usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 22.6405 15.9048181818182 32.5328636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 945 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 646 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 644 Number of spheres polar: 225, nonpolar: 168, out of current total: 644 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.64216 32.39302 5.91567 25.81800 22.54219 42.33106 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 296 Spheres center of coords (x y z): 26.1263868581081 15.5208291891892 33.0713935135135 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.2104660161042 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 22