usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 23.183 15.46275 32.1505833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 987 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 660 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 656 Number of spheres polar: 232, nonpolar: 178, out of current total: 656 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.24064 33.02499 5.46600 25.42869 22.15891 42.14075 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 414 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 319 Spheres center of coords (x y z): 25.4226697492163 15.1230344200627 33.1837191222571 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.703814574182 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 24