usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 24.1468571428571 15.1538928571429 31.3897857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1031 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 679 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 676 Number of spheres polar: 255, nonpolar: 199, out of current total: 676 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.33358 33.85749 5.19184 25.14316 21.39450 41.36674 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 394 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 354 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 327 Spheres center of coords (x y z): 25.7065854434251 14.9656747706422 32.7883402446483 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26144964796319 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 28