usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 24.0931724137931 14.513724137931 32.2231724137931 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1036 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 607 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 599 Number of spheres polar: 199, nonpolar: 169, out of current total: 599 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.12397 33.89756 4.54225 24.48037 22.29578 42.19911 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 250 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 210 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 26.2620240909091 14.2171623737374 34.0042912121212 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87349794846132 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 29