usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 24.1859310344828 14.6341034482759 32.18 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1107 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 658 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 654 Number of spheres polar: 228, nonpolar: 182, out of current total: 654 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.33074 34.13812 4.66164 24.63189 22.21192 42.09609 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 402 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 346 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 328 Spheres center of coords (x y z): 26.0887453353659 14.8467625 33.0612536585366 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52781222475601 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 29