usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 31.4767096774193 9.34832258064516 28.3775483870968 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1075 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 522 Number of spheres polar: 199, nonpolar: 148, out of current total: 522 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.47925 41.46130 -0.33775 18.70599 18.41934 37.95541 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 209 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 31.6016480136986 11.0712429452055 26.8590071917808 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.89164613628668 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 31