usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 31.4767096774193 9.34832258064516 28.3775483870968 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1075 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 522 Number of spheres polar: 199, nonpolar: 148, out of current total: 522 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.47925 41.46130 -0.33775 18.70599 18.41934 37.95541 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 313 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 31.0458030493274 10.8603582511211 26.8832067713004 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77296254174614 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 31