usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 21.50505 18.2976 35.03715 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1100 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 647 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 647 Number of spheres polar: 254, nonpolar: 192, out of current total: 647 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.05378 31.42242 8.33700 28.25174 25.90172 45.02865 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 247 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 205 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): 24.9810501666667 18.5045505 36.4649523888889 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.74620307145557 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 20