Distance from surface specified: 1.80 There are 24 ligand heavy atoms Ligand center of coords (x y z): 22.2345833333333 18.065125 34.9840416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11837 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9310 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8930 Number of spheres polar: 5527, nonpolar: 2597, out of current total: 8930 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.23480 34.34500 4.12780 32.06440 21.00800 48.98140 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1264 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 678 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 642 Spheres center of coords (x y z): 25.5883193146417 18.9465903426791 37.1436732087227 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.1014777507967 Final number of output spheres is: 200 Number of polar spheres: 129 Number of nonpolar spheres: 57 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 24