There are 24 ligand heavy atoms Ligand center of coords (x y z): 22.2345833333333 18.065125 34.9840416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 11837 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7721 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7721 Number of spheres polar: 4904, nonpolar: 2126, out of current total: 7721 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.23600 34.22360 6.06820 30.06000 22.98640 46.97660 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1018 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 593 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 571 Spheres center of coords (x y z): 26.0262521891419 19.5062623467601 36.2740966725044 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.0595694812022 Final number of output spheres is: 120 Number of polar spheres: 75 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 24