usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 30.5315 10.3537 29.522875
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1073
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 569
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 565
Number of spheres polar: 256, nonpolar: 132, out of current total: 565
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.58881 38.77950 0.36299 19.36969 19.56600 39.47878
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 323
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 283
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 251
Spheres center of coords (x y z): 30.4164158964143 11.2777101593626 27.8353215936255
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.41771150385583
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 22
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 40