usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 31.1907878787879 9.3670303030303 28.5220606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1127 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 575 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568 Number of spheres polar: 250, nonpolar: 151, out of current total: 568 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.21150 41.14843 -0.57497 18.53982 18.63435 38.40439 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): 30.2830659550562 11.4288918539326 26.8072780898876 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60047562564214 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33