usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -1.2247 36.1163 10.511 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 751 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 418 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 417 Number of spheres polar: 174, nonpolar: 127, out of current total: 417 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.56789 8.72656 26.24333 45.63873 2.00369 20.50818 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 214 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 188 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 150 Spheres center of coords (x y z): -1.35323506666667 32.7821254666667 12.9371976666667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18730446063253 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 10