usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 26.7591935483871 10.4481290322581 28.8992258064516 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 939 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 543 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 540 Number of spheres polar: 194, nonpolar: 147, out of current total: 540 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.77600 36.75629 0.45707 18.80689 18.91765 38.64439 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 332 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 300 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 290 Spheres center of coords (x y z): 27.1027551724138 11.6941246551724 26.8458878965517 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.13699599991795 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 31