usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -38.8056923076923 172.399498461538 70.7902307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1674 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1073 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1073 Number of spheres polar: 384, nonpolar: 437, out of current total: 1073 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -48.75326 -28.84518 162.40489 182.34827 60.79811 80.75955 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 255 Spheres center of coords (x y z): -36.3111221960784 169.334348666667 70.4242250980393 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.61925187919011 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26