usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): -29.9974 -18.7891 10.4662 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 752 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 507 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 507 Number of spheres polar: 188, nonpolar: 139, out of current total: 507 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -39.58400 -20.17246 -28.40358 -8.83917 1.98823 20.45755 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 257 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): -27.5615795566502 -16.185092364532 13.6100687684729 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.28626575940353 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 10