usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.5825625 19.0921875 45.05578125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1522 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 768 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 761 Number of spheres polar: 217, nonpolar: 347, out of current total: 761 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.39934 17.52528 9.11981 29.07748 35.13300 54.95935 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 177 Spheres center of coords (x y z): 10.0959454237288 20.5386748587571 45.4603666101695 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.09677623675348 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32