name of input pdb file: rec.crg name of output contact grid file: solvmap_sev.heavy atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.800000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): 11.14000 0.2530000 -3.640000 70.10900 61.82700 35.69200 box minimum and maximum x y z (A): 19.30100 14.29500 -5.526000 56.81900 56.44600 30.17800 dielectric grid expansion size (points/edge) 20 20 3 20 17 18 dielectric grid minimum and maximum x y z (A): 9.301001 4.295000 -7.026000 66.81900 64.94600 39.17800 solvation grid x, y, z dimensions: 75 84 71 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 72 the way there! 2 / 72 the way there! 3 / 72 the way there! 4 / 72 the way there! 5 / 72 the way there! 6 / 72 the way there! 7 / 72 the way there! 8 / 72 the way there! 9 / 72 the way there! 10 / 72 the way there! 11 / 72 the way there! 12 / 72 the way there! 13 / 72 the way there! 14 / 72 the way there! 15 / 72 the way there! 16 / 72 the way there! 17 / 72 the way there! 18 / 72 the way there! 19 / 72 the way there! 20 / 72 the way there! 21 / 72 the way there! 22 / 72 the way there! 23 / 72 the way there! 24 / 72 the way there! 25 / 72 the way there! 26 / 72 the way there! 27 / 72 the way there! 28 / 72 the way there! 29 / 72 the way there! 30 / 72 the way there! 31 / 72 the way there! 32 / 72 the way there! 33 / 72 the way there! 34 / 72 the way there! 35 / 72 the way there! 36 / 72 the way there! 37 / 72 the way there! 38 / 72 the way there! 39 / 72 the way there! 40 / 72 the way there! 41 / 72 the way there! 42 / 72 the way there! 43 / 72 the way there! 44 / 72 the way there! 45 / 72 the way there! 46 / 72 the way there! 47 / 72 the way there! 48 / 72 the way there! 49 / 72 the way there! 50 / 72 the way there! 51 / 72 the way there! 52 / 72 the way there! 53 / 72 the way there! 54 / 72 the way there! 55 / 72 the way there! 56 / 72 the way there! 57 / 72 the way there! 58 / 72 the way there! 59 / 72 the way there! 60 / 72 the way there! 61 / 72 the way there! 62 / 72 the way there! 63 / 72 the way there! 64 / 72 the way there! 65 / 72 the way there! 66 / 72 the way there! 67 / 72 the way there! 68 / 72 the way there! 69 / 72 the way there! 70 / 72 the way there! 71 / 72 the way there! 72 / 72 the way there! successful completion elapsed time (sec): 2156.9099 Wed Feb 8 17:31:12 PST 2012 rec.crg solvmap_sev.heavy 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.8 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom