usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 65.672875 94.1471875 44.82515625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1835 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 818 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 818 Number of spheres polar: 316, nonpolar: 418, out of current total: 818 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 55.68000 75.61983 84.18862 104.13876 34.82664 54.81674 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 328 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 269 Spheres center of coords (x y z): 67.3249255762082 96.2702282527881 45.2657969144982 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30939190276188 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32