usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 61.6083428571429 48.3554571428571 16.9935142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2198 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1088 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1088 Number of spheres polar: 251, nonpolar: 640, out of current total: 1088 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 51.64110 71.56930 38.38496 58.35237 7.10158 26.95014 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 340 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 254 Spheres center of coords (x y z): 58.3961450787401 46.1142666929134 18.0431243307087 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26476581281431 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 35